Package: mixhvg 1.0.1

mixhvg: Mixture of Multiple Highly Variable Feature Selection Methods

Highly variable gene selection methods, including popular public available methods, and also the mixture of multiple highly variable gene selection methods, <https://github.com/RuzhangZhao/mixhvg>. Reference: <doi:10.1101/2024.08.25.608519>.

Authors:Ruzhang Zhao [aut, cre], Hongkai Ji [aut]

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mixhvg.pdf |mixhvg.html✨
mixhvg/json (API)

# Install 'mixhvg' in R:
install.packages('mixhvg', repos = c('https://ruzhangzhao.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ruzhangzhao/mixhvg/issues

On CRAN:

rna-seq-analysisrna-seq-pipelinesingle-cellsingle-cell-rna-seqvariable-selection

4.00 score 4 stars 4 scripts 223 downloads 1 exports 181 dependencies

Last updated 22 days agofrom:435b01318f. Checks:6 OK, 2 FAILURE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 26 2025
R-4.5-winOKJan 26 2025
R-4.5-macOKJan 26 2025
R-4.5-linuxOKJan 26 2025
R-4.4-winOKJan 26 2025
R-4.4-macOKJan 26 2025
R-4.3-winOUTDATEDDec 14 2024
R-4.3-macOUTDATEDDec 14 2024

Exports:FindVariableFeaturesMix

Dependencies:abindaskpassassortheadbase64encbeachmatBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularbitopsblusterbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDelayedArraydeldirdigestdotCall64dplyrdqrngedgeRevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelimmalistenvlmtestlocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemetapodmgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectrarsvdRtsneS4ArraysS4VectorssassScaledMatrixscalesscattermorescransctransformscuttleSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArrayspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrSummarizedExperimentsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotvctrsviridisLitewithrxfunxtableXVectoryamlzoo

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